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The following are a collection of links to the documentation pages for OligoCounter and associated scripts and programs. Further help is available from the author, if necessary. Any Java issues should be followed up on the Java website and forums.

Documentation in pdf format

OligoCounter

Source files needed

How to run OligoCounter

OligoCounter parameters : an explanation

How to interpret OligoCounter output files


Visualise results

OligoViz

JCircleGraph