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Visualising OligoCounter results

OligoViz

Genome position is on the y axis, overrepresented oligos on the x axis (sorted by decreasing chi-squared value). A point is plotted if an oligo is present at a genome position, in green if the position is coding, or black if non-coding. This chromosome is from the bacterium Pseudomonas putida KT2440.
oligoviz image

JCircleGraph genome atlases

Parameters and their deviation from average are plotted on a circular graph. The legend displays all parameters and parameters on their distributions. Stronger colours indicate increasing deviation from average. The large GC-poor feature found at roughly 0.3 to 0.4 MB is the "integron island", a gene capture system of Vibrio cholerae O1 biovar eltor str. N16961 chromosome II.

circlegraph